miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|83819602|gb|CX267825.1|CX267825 GGAAGAGTGAAGCTCCTCCTCTCGAACAACAACAATGGCGACAATGGCTGCAATCGGATCCTTAAAAGTCCCTTCCTCTT
CCTCTTCCTCTTCCTCGAACCACACCCGTAGATTATCATCTTCTTCTCAACGGAAGACTCTCTCGTTCTCGTCGTCTTCT
CTTACCGGAGAGAAACTCAACCCCACGCAGGAGATCATCATCTCGAATCTCCCACGTGGCAACGAGAGAAGAACGCCATC
GATCGTCTCTCCAAAAGCAGTTTCCGATTCGCAAAACTCGCAAACTTGCCTTGATCCTGACGCTAGCAGAAGTGTGTTGG
GGATAATTCTGGGAGGTGGTGCTGGAACGAGATTGTATCCGCTAACGAAGAAGAGAGCGAAGCCAGCTGTTCCTCTCGGC
GCCAACTACCGTCTCATTGATATCCCAGTGAGCAATTGCTTGAACAGTAACATCTCCAAGATCTATGTCCTTACTCAGTT
CAACTCCGCTTCTCTCAACCGCCATCTCTCCCGAGCTTACGCCAGCAACATGGGTGGTTACAAGAACGAAGGCTTCGTCG
AGGGTCTTGCTGCTCAACAGAGTCCCGAGAATCCCAATTG




Most similar to sp|Q9M462|GLGS_BRANA

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q9M462|GLGS_BRANA Glucose-1-phosphate adenylyltransferase small
           subunit, chloroplastic OS=Brassica napus GN=AGPS1 PE=2
           SV=1
          Length = 520

 Score =  309 bits (792), Expect = 8e-84
 Identities = 163/182 (89%), Positives = 163/182 (89%)
 Frame = +2

Query: 53  IGSLKVPXXXXXXXXXXXXXXXXXXQRKTLSFSSSSLTGEKLNPTQEIIISNLPRGNERR 232
           IGSLKVP                  QRKTLSFSSSSLTGEKLNPTQEIIISNLPRGNERR
Sbjct: 7   IGSLKVPSSSSNHTRRLSSSS----QRKTLSFSSSSLTGEKLNPTQEIIISNLPRGNERR 62

Query: 233 TPSIVSPKAVSDSQNSQTCLDPDASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYR 412
           TPSIVSPKAVSDSQNSQTCLDPDASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYR
Sbjct: 63  TPSIVSPKAVSDSQNSQTCLDPDASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYR 122

Query: 413 LIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEGLAAQQSPEN 592
           LIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVE LAAQQSPEN
Sbjct: 123 LIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPEN 182

Query: 593 PN 598
           PN
Sbjct: 183 PN 184